Liti, G. et al. Population genomics of domestic and wild yeasts. Nature 458, 337–341 (2009)
Google Scholar
Sutter, N. et al. A single IGF1 allele is a major determinant of small size in dogs. Science 316, 112–115 (2007)
Google Scholar
Savolainen, P., Zhang, Y. P., Luo, J., Lundeberg, J. & Leitner, T. Genetic evidence for an East Asian origin of domestic dogs. Science 298, 1610–1613 (2002)
Google Scholar
Parker, H. et al. Genetic structure of the purebred domestic dog. Science 304, 1160–1164 (2004)
Google Scholar
Vilà, C., Maldonado, J. & Wayne, R. Phylogenetic relationships, evolution, and genetic diversity of the domestic dog. J. Hered. 90, 71–77 (1999)
Google Scholar
Pritchard, J., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945–959 (2000)
Google Scholar
Parker, H. et al. Breed relationships facilitate fine-mapping studies: a 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds. Genome Res. 17, 1562–1571 (2007)
Google Scholar
Wilcox, B. & Walkowicz, C. The Atlas of Dog Breeds of the World 5th edn (TFH Publications, 1995)
American Kennel Club. The Complete Dog Book 20th edn (Ballantine Books, 2006)
Vilà, C., Seddon, J. & Ellegren, H. Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends Genet. 21, 214–218 (2005)
Google Scholar
Pang, J. et al. mtDNA data indicate a single origin for dogs south of Yangtze river, less then 16,300 years ago, from numerous wolves. Mol. Biol. Evol. 26, 2849–2864 (2009)
Google Scholar
Conrad, D. et al. A worldwide survey of haplotypes variation and linkage disequilibrium in the human genome. Nature Genet. 38, 1251–1260 (2006)
Google Scholar
Jakobsson, M. et al. Genotype, haplotype and copy-number variation in worldwide human populations. Nature 451, 998–1003 (2008)
Google Scholar
Li, J. et al. Worldwide human relationships inferred from genome-wide patterns of varition. Science 319, 1100–1104 (2008)
Google Scholar
Boyko, A. et al. Complex population structure in African village dogs and its implication for inferring dog domestication history. Proc. Natl Acad. Sci. USA 106, 13903–13908 (2009)
Google Scholar
Dayan, T. Early domesticated dogs of the Near East. J. Archaeol. Sci. 21, 633–640 (1999)
Google Scholar
Germonpre, M. et al. Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes. J. Archaeol. Sci. 36, 473–490 (2009)
Google Scholar
Verginelli, F. et al. Mitochondrial DNA from prehistoric canids highlights relationships between dogs and South-East European wolves. Mol. Biol. Evol. 22, 2541–2551 (2005)
Google Scholar
Leonard, J. et al. Ancient DNA evidence for Old World origin of New World dogs. Science 298, 1613–1616 (2002)
Google Scholar
Sabeti, P. et al. Genome-wide detection and characterization of positive selection in human populations. Nature 449, 913–918 (2007)
Google Scholar
Innan, H. & Kim, Y. Pattern of polymorphism after strong artificial selection in a domestication event. Proc. Natl Acad. Sci. USA 101, 10667–10672 (2004)
Google Scholar
Balschun, D. et al. Deletion of the ryanodine receptor type 3 (RyR3) impairs forms of synaptic plasticity and spatial learning. EMBO J. 18, 5264–5273 (1999)
Google Scholar
Cruz, F., Vilà, C. & Webster, M. The legacy of domestication: accumulation of deleterious mutations in the dog genome. Mol. Biol. Evol. 25, 2331–2336 (2008)
Google Scholar
Gray, M. et al. Linkage disequilibrium and demographic history of wild and domestic canids. Genetics 181, 1493–1505 (2009)
Google Scholar
Candille, S. et al. A β-defensin mutation causes black coat color in domestic dogs. Science 318, 1418–1423 (2007)
Google Scholar
Cadieu, E. et al. Coat variation in the domestic dog is governed by variants in three genes. Science 326, 150–153 (2009)
Google Scholar
Parker, H. et al. An expressed Fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs. Science 325, 995–998 (2009)
Google Scholar
Pedrosa, S. et al. Evidence of three maternal lineages in near eastern sheep supporting multiple domestication events. Proc. R. Soc. Lond. B 272, 2211–2217 (2005)
Elsik, C. et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 324, 528–532 (2009)
Anderson, T. et al. Molecular and evolutionary history of melanism in North American gray wolves. Science 323, 1339–1343 (2009)
Google Scholar
Macdonald, D. W. & Barrett, P. Mammals of Britain and Europe (Collins, 1993)
Savolainen, P., Leitner, T., Wilton, A., Matisoo-Smith, E. & Lundeberg, J. A detailed picture of the origin of the Australian dingo, obtained from the study of mitochondrial DNA. Proc. Natl Acad. Sci. USA 101, 12387–12390 (2004)
Google Scholar
Sablin, M. & Khlopachev, G. The earliest Ice Age dogs: evidence from Eliseevichi I. Curr. Anthropol. 43, 795–799 (2002)
Google Scholar
Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559–575 (2007)
Google Scholar
vonHoldt, B. et al. The genealogy and genetic viability of reintroduced Yellowstone grey wolves. Mol. Ecol. 17, 252–274 (2008)
Google Scholar
Pritchard, J., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945–959 (2000)
Google Scholar
Price, A. et al. Principle components analysis corrects for stratification in genome-wide association studies. Nature Genet. 38, 904–909 (2006)
Google Scholar
Schneider, S., Roessli, D. & Excoffier, L. Arlequin: a software for population genetics data analysis v.2.000 (Genetics and Biometry Lab, Department of Anthropology, University of Geneva, 2000).
